Research | People | Publications | Software | Data | Vacancies

Space-timE RePresentation, Imaging

and cellular dynamics of

molecular COmplexes




Recent Publications

Thesis and HdR

  • C. Kervrann. Modèles statistiques pour l'analyse d'images, algorithmes et applications en imagerie bio-cellulaire et moléculaire. Habilitation à diriger des recherches, Mention Traitement du Signal et Télécommunications, Université de Rennes 1, June 2010 (see TEL-ARCHIVES-OUVERTES-00541298 / slides and videos)
  • A. Basset. Detection and characterization of dynamical events in image sequences based on local statistical approaches: Application to membrane fusion in TIRF microscopy. PhD Thesis, Mention Traitement du Signal et Télécommunications, Université de Rennes 1, December 2015 (see TEL-ARCHIVES-OUVERTES-01304780)
  • D. Fortun. Aggregation framework and patch-based image representation for optical flow. PhD Thesis, Mention Traitement du Signal et Télécommunications, Université de Rennes 1, July 2014 (see TEL-ARCHIVES-OUVERTES-0110456)
  • P. Roudot. Image processing methods for dynamical intracellular processes analysis in quantitative fluorescence microscopy. PhD Thesis, Mention Traitement du Signal et Télécommunications, Université de Rennes 1, May 2014 (see TEL-ARCHIVES-OUVERTES-01103887)
  • T. Pécot. Modélisation et estimation du trafic intracellulaire par tomographie de réseaux et microscopie de fluorescence. PhD Thesis, Mention Traitement du Signal et Télécommunications, Université de Rennes 1, March 2010 (see TEL-ARCHIVES-OUVERTES-00541304)
  • T. Crivelli. Mixed-state Markov models for image motion analysis. PhD Thesis, Mention Traitement du Signal et Télécommunications, Université de Rennes 1, March 2010

Submissions, papers in preparation, preprints

  • V. Briane, C. Kervrann, M. Vimond. A statistical analysis of particle trajectories in living cells, preprint, June 2017 (HAL-INRIA-01557705)
  • F. Lavancier, T. Pécot, L. Zengzhen, C. Kervrann. A fast automatic colocalization method for 3D live cell and super-resolution microscopy, preprint, August 2017 (HAL-INRIA-01577118)
  • F. Lavancier, P. Rochet. A tutorial on estimator averaging in spatial point process models, preprint, March 2017 (HAL-INRIA-01341125)
  • H.-N. Nguyen, V. Paveau, C. Cauchois, C. Kervrann. A variational method for dejittering large fluorescence line scanner images, preprint, August 2017 (HAL-INRIA-01577139)
  • H.-N. Nguyen, V. Paveau, C. Cauchois, C. Kervrann. ATMAD : robust image analysis for Automatic Tissue MicroArray De-arraying , preprint, August 2017, (HAL-INRIA-01577238)
  • T. Pécot, L. Zengzhen, J. Boulanger, J. Salamero, C. Kervrann. QuantEv: quantifying the spatial distribution of intracellular events , preprint, August 2017 (HAL-INRIA-01575913)
  • A. Poinas, B. Delyon, F. Lavancier Mixing properties and central limit theorem for associated point processes , preprint, May 2017 (HAL-INRIA-01519096)
  • V. Briane, M. Vimond, C. Kervrann. A change detection procedure for particle motion analysis in live cells, 2017
  • A. Caranfil, C. Kervrann. Local temporal image correlation spectroscopy for sparse diffusion estimation in fluorescence imaging, 2017

Academic Journals

2017

  • M. Jain, J. van Gemert, H. Jégou, P. Bouthemy, C.G.M Snoek. Tubelets: Unsupervised action proposals from spatiotemporal super-voxels, International Journal of Computer Vision, 124(3):287-311, September 2017 (open access)
  • A. Basset, P. Bouthemy, J. Boulanger, F. Waharte, J. Salamero, C. Kervrann. An extended model of vesicle fusion at the plasma membrane to estimate protein lateral diffusion from TIRF microscopy images, BMC Bioinformatics, 18:352, July 2017 (paper on-line)
  • J.M. Perez Rua, A. Basset, P. Bouthemy. Detection and localization of anomalous motion in video sequences from local histograms of labeled affine flows, Frontiers in ICT: Computer Image Analysis, 4:1-19 2017 (paper on-line)
  • C.A.N. Biscio, F. Lavancier. Contrast estimation for parametric stationary determinantal point processes, Scandinavian Journal of Statistics 44(1):204–229, 2017 (HAL-INRIA-01215582)
  • J.-F. Coeurjolly, F. Lavancier. Parametric estimation of pairwise Gibbs point processes with infinite range interaction , Bernoulli 23(2):1299-1334, 2017 (HAL-INRIA-01092225)
  • D. Dereudre, F. Lavancier. Consistency of likelihood estimation for Gibbs point processes, The Annals of Statistics 45(2):744–770, 2017 (HAL-INRIA-01144877)
  • Q. Jin, I. Grama, C. Kervrann, Q. Liu. Non-local means and optimal weights for noise removal , SIAM Journal on Imaging Sciences, 2017 (to appear), (HAL-INRIA-01575918)
  • P. Roudot, L. Ding, K. Jaqaman, C. Kervrann, G. Danuser. Piecewise-stationary motion modeling and iterative smoothing to track heterogeneous motion in dense intracellular environments , IEEE T. Image Processing, 2017 (to appear) (HAL-INRIA-01575754)

2016

  • D. Fortun, P. Bouthemy, C. Kervrann. A variational aggregation framework for patch-based optical flow estimation, Journal of Mathematical Imaging and Vision, 56(2):280–299, October 2016
  • C. A. N. Biscio, F. Lavancier. Quantifying repulsiveness of determinantal point processes, to appear, Bernouilli, 22(4):2001-2028, 2016 (HAL-INRIA-01003155)
  • C. A. N. Biscio, F. Lavancier. Brillinger mixing of determinantal point processes and statistical applications , Electronic Journal of Statistics 10(1):582–607, 2016 (HAL-INRIA-01179831 )
  • J.-F. Coeurjolly, F. Lavancier. Parametric estimation of pairwise Gibbs point processes with infinite range interaction, Bernoulli, 2016 (HAL-INRIA-01092225)
  • F. Lavancier, J. Moeller. Modelling aggregation on the large scale and regularity on the small scale in spatial point pattern datasets , Scandinavian Journal of Statistics 43(2):587–609, 2016 (HAL-INRIA-01155646) [hal:hal-01155646].
  • X. Tang, H. Liu, A. Srivastatva, T. Pécot, Z. Chen, Q. Wang, K. Huang, M. Sàenzrobles, P. Cantalupo, J. Pipas, G. Leone. Transcriptome regulation and chromatin occupancy by E2F3 and MYC in mice, Scientific Data 3:160008, February 2016, (HAL-INRIA-01416818)
  • D. Fortun, P. Bouthemy, C. Kervrann. Aggregation of local parametric candidates with exemplar-based occlusion handling for optical flow, Computer Vision and Image Understanding, 145:81-94, April 2016
  • F. Lavancier, P. Rochet. A general procedure to combine estimators, Computational Statistics and Data Analysis, 94:175–192, February 2016 (HAL-INRIA-00936024)
  • C. Kervrann, C.O. Sorzano, S.T. Acton, J.-C. Olivo-Marin, M. Unser. A guided tour of selected image processing and analysis methods for fluorescence and electron microscopy, IEEE Journal of Selected Topics in Signal Processing, Special issue on Advanced Signal Processing in Microscopy and Cell Imaging, 10(1):6-30, February 2016
  • C. Kervrann, C.O. Sorzano, S.T. Acton, J.-C. Olivo-Marin, M. Unser. Introduction to the Issue on Advanced Signal Processing in Microscopy and Cell Imaging, IEEE Journal of Selected Topics in Signal Processing, Special issue on Advanced Signal Processing in Microscopy and Cell Imaging, 10(1):3-5, February 2016
  • T. Pécot, C. Kervrann, J. Salamero, J. Boulanger. Counting-based particle flux estimation for traffic analysis in live cell imaging, IEEE Journal of Selected Topics in Signal Processing, Special issue on Advanced Signal Processing in Microscopy and Cell Imaging, 10(1): 203-216, February 2016
  • M. Jain, H. Jégou, P. Bouthemy. Improved motion description for action classification, Frontiers in ICT: Computer Image Analysis, 1-17, January 2016 (paper on-line)

2015

  • P. Trikha, N. Sharma, C. Pena, A. Reyes, T. Pécot, et al. E2f3 in tumor macrophages promotes lung metastasis, Oncogene, Nov. 2015 (HAL-INRIA-01244951)
  • H. Liu, X. Tang, A. Srivastava, T. Pécot, P. Daniel, et al. Redeployment of Myc and E2f1-3 drives Rb-deficient cell cycles, Nature Cell Biology, 17(8):1036-1048, 2015 (HAL-INRIA-01244839)
  • D. Jones, D.-Y. Park, M. Anghelina, T. Pécot, R. Machiraju, et al. Actin grips: circular actin-rich cytoskeletal structures that mediate the wrapping of polymeric microfibers by endothelial cells, Biomaterials, 52:395-406, 2015 (HAL-INRIA-01244825)
  • E. Caserta, O. Egriboz, H. Wang, C. Martin, C. Koivisto, T. Pécot et al. Noncatalytic PTEN missense mutation predisposes to organ-selective cancer development in vivo, Genes and Development, 29(16):1707-1720, 2015 (HAL-INRIA-01244933)
  • F. Lavancier , J. Moller, R. Ege. Determinantal point process models and statistical inference, Journal of the Royal Statistical Society: Series B, 77(4):853–877, 2015 (HAL-01241077)
  • F. Lavancier, J. Moller. Modelling aggregation on the large scale and regularity on the small scale in spatial point pattern datasets Scandinavian Journal of Statistics, December 2015 (HAL-01155646)
  • P. Roudot, C. Kervrann, C. Blouin, C., F. Waharte. Lifetime estimation on moving sub-cellular objects in frequency domain FLIM imaging, Journal of the Optical Society of America A, 32(10):1821-1835, 2015
  • A. Basset, J. Boulanger, P. Bouthemy, C. Kervrann, J. Salamero. Détection de spots avec sélection d’échelle automatique et seuillage adaptatif en microscopie de fluorescence, Traitement du Signal, 32(2-3):287-310, 2015
  • A. Basset, J. Boulanger, J. Salamero, P. Bouthemy, C. Kervrann. Adaptive spot detection with optimal scale selection in fluorescence microscopy images, IEEE Transactions on Image Processing, 24(11):4512-4527, Nov. 2015
  • D. Fortun, P. Bouthemy, C. Kervrann. Optic flow modeling and computation: a survey, Computer Vision and Image Understanding, 134:1-21, May 2015
  • T. Pécot, P. Bouthemy, J. Boulanger, A. Chessel, S. Bardin, J. Salamero, C. Kervrann. Background fluorescence estimation and vesicle segmentation in live cell imaging with conditional random fields, IEEE Transactions on Image Processing, 24(2):667-680, 2015

2014

  • N. Chenouard, I. Smal, F. De Chaumont, M. Maska, I.F. Sbalzarini, Y.Gon, J. Cardinale, C. Carthel, S. Coraluppi, M. Winter, A.R. Cohen, W.J. Godinez, K. Rohr, Y. Kalaidzidis, L. Liang, J. Duncan, H. Shen, K. Magnusson, J. Jalden, P. Paul-Gilloteaux, P. Roudot, C. Kervrann, F. Waharte, J.-Y. Tinevez, J. Willemse, K. Celler, H.-W. Dan, Y.-S Tsai, C. Ortiz De Solorzano, J.-C. Olivo-Marin, E. Meijering. Objective comparison of particle tracking methods: Results and lessons from the first particle tracking challenge, Nature Methods, 11(3):281–289, 2014 (paper.pdf)

2013

  • T. Crivelli, B. Cernuschi-Frias, P. Bouthemy and J.-F. Yao. Motion textures: modeling, classification and segmentation using mixed-state Markov random fields. SIAM Journal on Imaging Sciences, 6(4):2484-2520, 2013 (doi:10.1137/120872048)
  • A. Guesdon, S. Blestel, C. Kervrann, D. Chrétien. Single versus dual-axis cryo-electron tomography of microtubules assembled in vitro: Limits and perspectives. Journal of Structural Biology, 181(2):169–178, Feb. 2013 (see HAL-INRIA-00763814 and doi.j.jsb.2012.11.004)

2012

  • M. Pinot, V. Steiner, B. Dehapiot, B.-K. Yoo, F. Chesnel, L. Blanchoin, C. Kervrann, Z. Gueroui. Confinement induces actin flow in a meiotic cytoplasm. Proc Natl Acad Sci USA. 109(29):11705-11710, 2012 (see HAL-INSERM-0717415)
  • A. Gidon, S. Bardin, J. Boulanger, F. Waharte, B. Cinquin, L. Heliot, H. de la salle, D. Hanau, Ch. Kervrann, B. Goud, J. Salamero. Rab11A/MyosinVb/Rab11-FIP2 complex frames two late recycling steps of langerin from ERC to plasma membrane. Traffic, 13(6):815-833, 2012

2011

  • F. Coquelle, S. Blestel, C. Heichette, I. Arnal, C. Kervrann, D. Chrétien D. Cryo-electron tomography of microtubules assembled in vitro from purified components. Methods Molecular Biology, 777:193-208, 2011
  • T. Crivelli, P. Bouthemy, B. Cernuschi-Frias and J.-F. Yao. Simultaneous motion detection and background reconstruction with a conditional mixed-state Markov random field. International Journal of Computer Vision, 94(3):295-316, 2011
  • Ch. Kervrann, J. Boulanger, T. Pécot, P. Pérez, J. Salamero. Multiscale neighborhood-wise decision fusion for redundancy detection in image pairs. SIAM J. Multiscale Modeling & Simulation, 9(4):1829–1865, 2011 pdf (see HAL-INRIA-00487051)
  • F. Palhano, G. Andrade Barroso, P. Coupé, P. Hellier. Real time ultrasound image denoising. Journal of Real-Time Image Processing, 6(1):15-22, March 2011 (see HAL-INRIA-00476122)

2010

  • P.M. Carlton, J. Boulanger, Ch. Kervrann, J.-B. Sibarita, J. Salamero, S. Gordon-Messer, J.E. Haber, S. Haase, L. Shao, L. Winoto, A. Matsuda,, P. Kner, S. Usawa, Y. Strukov, M. Gustafsson, Z. Kam, D. Agard, J. Sedat. Fast live simultaneous multi-wavelength 4-dimensional optical microscopy. Proc Natl Acad Sci USA, 107(37):16016-16022, 2010 (see HAL-INRIA-00540978)
  • J. Boulanger, A. Gidon, Ch. Kervrann, J. Salamero. A patch-based method for repetitive and transient event detection in fluorescence Imaging. PLoS One, 5(10): e13190, 2010 (see HAL-INRIA-00541072)
  • A. Matsuda, L.Shao, J. Boulanger, Ch. Kervrann, P.M. Carlton, P. Kner, E. Brandlund, D. Agard, J.W. Sedat. Condensed mitotic chromosome structure at nanometer resolution using PALM and EGFP-histones. PloS One, (9):e12768, 2010 (see HAL-INRIA-00541020)
  • J. Boulanger, Ch. Kervrann, P. Bouthemy, P. Elbau, J.-B. Sibarita, J. Salamero. Patch-based non-local functional for denoising fluorescence microscopy image sequences. IEEE Trans on Medical Imaging, 29(2):442-454, 2010 pdf (see HAL-INRIA-00541082)
  • B. Cinquin, A. Chessel, A. Gidon, S. Bardin, T. Pécot, J. Boulanger, Ch. Kervrann, J. Salamero. Advanced microcopy to study tracking and spatiotemporal organization of intracellular membranes. Bio-Medical Materials and Engineering, 2010 (see HAL-INRIA-00541284)
  • C. Nauczyciel, P. Hellier, X. Morandi, S. Blestel, D. Drapier, J.C. Ferre, C. Barillot, B. Millet. Assessment of standard coil positioning in transcranial magnetic stimulation in depression. Psychiatry Research, 2010 (see HAL-INRIA-00535787)
  • P. Hellier, P. Coupé, X. Morandi, D. L. Collins. An automatic geometrical and statistical method to detect acoustic shadows in intraoperative ultrasound brain images . Medical Image Analysis, 14(2):195-204, 2010 (see HAL-INRIA-00432724)
  • T. Crivelli, B. Cernuschi-Frias, P. Bouthemy, J.-F. Yao. Mixed-state causal modeling for statistical KL-based motion texture tracking. Pattern Recognition Letters, 31(14):2286-2294, 2010 (see HAL-INRIA-00541270)

Book Chapters

  • T. Crivelli, P. Bouthemy, B. Cernuschi-Frias, J.-F. Yao. Mixed-state Markov models in image motion analysis. In Machine Learning for Vision-based Motion Analysis, L. Wang, G. Zhao, L. Cheng, M. Pietikäinen (eds), Springer, Part 2, pages 77-115, 2010 (see HAL-INRIA-00541253)
  • A. Hervieu, P. Bouthemy, J.-P. Le Cadre. Understanding sports video using players trajectories. In Intelligent Video Event Analysis and Understanding, J. Zhang, L. Shao, L. Zhang, G.A. Jones (eds), Springer, 2010

International Conferences with Proceedings

2017

  • B.M. Toledo Acosta, A. Basset, P. Bouthemy, C. Kervrann. Multi-scale spot segmentation with selection of image scales. Proc. IEEE Int. Conference on Acoustics, Speech and Signal Processing (ICASSP'17), New Orleans, March 2017 (HAL-INRIA-01575720)
  • D. Fortun, N. Debroux, C. Kervrann. Spatially-variant kernel for optical flow under low signal-to-noise ratios: application to microscopy , Proc. of ICCV Workshop – BioImage Computing (BIC), Venice, Italy, October 2017 (HAL-INRIA-01561164)
  • O. Miksik, J.-M. Pérez-Rùa, P.H.S. Torr, P. Pérez. ROAM: a Rich Object Appearance Model with application to rotoscoping , Proc. of Conference on Computer Vision and Pattern Recognition (CVPR), Honolulu, United States, July 2017, (HAL-INRIA-01576017)

2016

  • P. Bouthemy, B.M. Toledo Acosta, B. Delyon. Robust selection of parametric motion models in image sequences. Proc. IEEE Int. Conference on Image Processing (ICIP'16), Phoenix, September 2016
  • J.M. Perez Rua, T. Crivelli, P. Perez, P. Bouthemy. Hierarchical motion decomposition for dynamic scene parsing. Proc. IEEE Int. Conference on Image Processing (ICIP'16), Phoenix, September 2016
  • J.M. Perez Rua, T. Crivelli, P. Perez, P. Bouthemy. Discovering motion hierarchies via tree-structured coding of trajectories. Proc. 27th British Machine Vision Conference (BMVC'2016), York, September 2016
  • J.M. Perez Rua, T. Crivelli, P. Bouthemy, P. Perez. Determining occlusions from space and time image reconstructions. Proc. Conference on Computer Vision and Pattern Recognition (CVPR'16), Las Vegas, June 2016
  • B.M. Toledo Acosta, P. Bouthemy, C. Kervrann. A common image representation and a patch-based search for correlative light-electron-microscopy (CLEM) registration. Proc. IEEE Int. Symp. on Biomedical Imaging (ISBI'16), Prague, April 2016
  • V. Briane, M. Vimond, C. Kervrann. An adaptive statistical test to detect non Brownian diffusion from particle trajectories. Proc. IEEE Int. Symp. on Biomedical Imaging (ISBI'16), Prague, April 2016

2015

  • F. Lavancier, C. Kervrann . A two-color interacting random balls model for co-localization analysis of proteins. Second Int. Conf. in Geometric Science of Information (GSI'2015), Palaiseau, France, October 28-30, 2015 (Springer, 9389, Lecture notes in computer science (LNCS)
  • D. Fortun, P. Bouthemy, C. Kervrann. Sparse aggregation framework for optical flow estimation. Fifth Int. Conf. on Scale Space and Variational Methods in Computer Vision (SSVM'15), Liège Cap Ferret, June 2015
  • A. Basset, P. Bouthemy, J. Boulanger, F. Waharte, C. Kervrann, J. Salamero. Detection and estimation of membrane diffusion during exocytosis in TIRFM image sequences . Proc. IEEE Int. Symp. on Biomedical Imaging (ISBI'15), New-York City, April 2015
  • H.-N. Nguyen, C. Kervrann, C. Cauchois, V. Paveau . Automatic core segmentation and registration for fast tissue microarray de-arraying. Proc. IEEE Int. Symp. on Biomedical Imaging (ISBI'15), New-York City, April 2015

2014

  • C. Kervrann. PEWA: Patch-based Exponentially Weighted Aggregation for image denoising. Proc. Neural Information Processing Systems (NIPS'14), Montreal, Canada, Décembre 2014 (see NIPS 2014 page) (see HAL-INRIA-01103358) (see Poster )
  • C. Kervrann, P. Roudot, F. Waharte. Approximate Bayesian Computation, stochastic algorithms and non-local means for complex noise models. Proc. IEEE Int. Conf. on Image Processing (ICIP'14), Paris, October 2014 (see HAL-INRIA-01103322)
  • C. Kervrann, S. Blestel, D. Chrétien. Conditional Random Fields for tubulin-microtubule segmentation in cryo-electron tomography . Proc. IEEE Int. Conf. on Image Processing (ICIP'14), Paris, October 2014 (see HAL-INRIA-01103330)
  • A. Basset, P. Bouthemy, C. Kervrann. Recovery of motion patterns and dominant paths in videos of crowded scenes. Proc. IEEE Int. Conf. on Image Processing (ICIP'14), Paris, October 2014
  • M. Jain, J. Van Gemert, H. Jegou, P. Bouthemy, C. Snoek. Action localization by tubelets from motion. Proc. Conference on Computer Vision and Pattern Recognition (CVPR'14), Columbus, Ohio, June 2014 (see HAL-INRIA-00996844)
  • P. Allain, C. Kervrann. Physical modeling of microtubules network. Proc. Int. Workshop on New Computational Methods for Inverse Problems (NMCIP'14), Paris, May 2014
  • A. Basset, J. Boulanger, P. Bouthemy, C. Kervrann, J. Salamero. SLT-LoG: A vesicle segmentation method with automatic scale selection and local thresholding applied to TIRF microscopy. Proc. IEEE Int. Symp. on Biomedical Imaging (ISBI'14), Beijing, April 2014.
  • A. Basset, P. Bouthemy, J. Boulanger, J. Salamero, C. Kervrann. Localization and classification of membrane dynamics in TIRF microscopy image sequences. Proc. IEEE Int. Symp. on Biomedical Imaging (ISBI'14), Beijing, April 2014
  • T. Pécot, J. Boulanger, C. Kervrann, P. Bouthemy, J. Salamero. Estimation of the flow of particles within a partition of the image domain in fluorescence video-microscopy. Proc. IEEE Int. Symp. on Biomedical Imaging (ISBI'14), Beijing, April 2014

2013

  • A. Chessel, F. Waharte, J. Salamero, C. Kervrann. A maximum likelihood method for lifetime estimation in photon counting-based fluorescence lifetime imaging microscopy. Proc. IEEE European Signal Processing Conference (EUSIPCO'13), Marrakech, September 2013
  • D. Fortun, C. Chen, P. Paul-Gilloteaux, F. Waharte, J. Salamero, C. Kervrann. Correlation and variational approaches for motion and diffusion estimation in fluorescence imaging. Proc. IEEE European Signal Processing Conference (EUSIPCO'13), Marrakech, September 2013
  • A. Basset, P. Bouthemy, C. Kervrann. Frame-by-frame crowd motion classification from affine motion models. Proc. IEEE Int. Conf. on Advanced Video and Signal-Based Surveillance (AVSS'13), Krakow, August 2013
  • M. Jain, H. Jegou, P. Bouthemy. Better exploiting motion for better action recognition. Proc. Conference on Computer Vision and Pattern Recognition (CVPR'13), Portland, Oregon, June 2013
  • D. Fortun, P. Bouthemy, P. Paul-Gilloteaux, C. Kervrann. Aggregation of patch-based estimations for illumination-invariant optical flow in live cell imaging. Finalist for Best Student Paper Award, Proc. IEEE Int. Symp. on Biomedical Imaging (ISBI'13), San-Francisco, CA, April 2013
  • P. Roudot, C. Kervrann, J. Boulanger, F. Waharte. Noise modeling for intensified camera in fluorescence imaging: application to image denoising. Proc. IEEE Int. Symp. on Biomedical Imaging (ISBI'13), San-Francisco, CA, April 2013
  • S. Ozeré, P. Bouthemy, F. Spindler, P. Paul-Gilloteaux, C. Kervrann. Robust parametric stabilization of moving cells with intensity correction in light microscopy image sequences. Proc. IEEE Int. Symp. on Biomedical Imaging (ISBI'13), San-Francisco, CA, April 2013

2012

  • H.-F. Yang, X. Descombes, C. Kervrann, C. Medioni, F. Besse.. Tracking growing axons by particle filtering in 3D+t fluorescent two-photon microscopy images. Proc. Asian Conference on Computer Vision (ACCV'12), Daejeon, Korea, Republic Of, November 2012 (see HAL-INRIA-00740966)
  • D. Fortun, C. Kervrann. Semi-local variational optical flow estimation. Proc. IEEE Int. Symp. on Image Processing (ICIP'12), Orlando, Florida, September 2012 (see HAL-INRIA-00763806)
  • P. Roudot, C. Kervrann, J. Boulanger, F. Waharte. Lifetime map reconstruction in frequency-domain fluorescence lifetime imaging microscopy. Proc. IEEE Int. Conf. on Image Processing (ICIP'12), Orlando, Florida, September 2012 (see HAL-INRIA-00763803)
  • P. Roudot, C. Kervrann, F. Waharte. Semi-parametric robust Gaussian fitting. IEEE ISBI 2012 Workshop: Particle Tracking Challenge, Barcelona, Spain, May 2012
  • P. Roudot, C. Kervrann, F. Waharte. Lifetime estimation of moving vesicles in frequency-domain fluorescence lifetime imaging microscopy. Proc. IEEE Int. Symp. on Biomedical Imaging (ISBI'12), pp. 668-671, Barcelona, Spain, May 2012 (see HAL-INRIA-00763790)

2010

  • A. Chessel, B. Cinquin, S. Bardin, J. Salamero, J. Boulanger, C. Kervrann. A detection-based framework for the analysis of recycling in TIRF microsocopy. In Proc. IEEE Int. Symp. on Biomedical Imaging: from nano to macro (ISBI'10), pp. 1281-1284, Rotterdam, The Netherlands, April 2010 pdf (see HAL-INRIA-00541102)

International Conferences, Workshops, Invited Talks

  • V. Briane, M. Vimond, C. Kervrann, Classification of diffusion dynamics from particle trajectories , Quantitative BioImaging (QBI), College-Station, United States, January 2017
  • V. Briane, M. Vimond, C. Kervrann, Robust classification of particle tracks for characterization of diffusion and dynamics in fluorescence microscopy , Focus on Microscopy (FOM), Bordeaux, France, April 2017
  • P. Bouthemy. An automatic image-based registration method for correlative light-electron microscopy.. 15ème colloque de la Société Française des Microscopies (invited conference), Bordeaux, France, July 2017
  • E. Moebel, C. Kervrann. Denoising and missing wedge reconstruction in cryo electron tomography.. Eur. Microscopy Congress (ECM), Lyon, France, September 2016
  • V. Briane, M. Vimond, C. Kervrann. An adaptive statistical test to detect non Brownian diffusion from particle trajectories.. French-Danish Workshop Spatial Statistics and Image Analysis in Biology (SSIAB 2016), Rennes, France, May 2016
  • T. Pécot, F. Lavancier, C. Kervrann. A non-parametric procedure for co-localization studies in fluorescence microscopy.. French-Danish Workshop Spatial Statistics and Image Analysis in Biology (SSIAB 2016), Rennes, France, May 2016
  • C. Kervrann. PEWA: Patch-based Exponentially Weighted Aggregation for image denoising.. SIAM Conf. Imaging Science 2016 (IS16), Albuquerque, USA, May 2016 P. Roudot, L. Ding, K. Jaqaman, C. Kervrann, G. Danuser. Tracking heterogeneous particle motions in dense intra-cellular environments, SIAM Conf. Imaging Science 2016 (IS16), Albuquerque, USA, May 2016
  • B.M. Toledo Acosta, P. Bouthemy, C. Kervrann. A scale-adaptive method for retracing and registering in correlative light-electron microscopy. SIAM Conference on Imaging Sciences 2016, Albuquerque, May 2016
  • C. Kervrann, J. Salamero. Joint localization, estimation and classification of membrane dynamics in TIRF microscopy image sequences, Quantitative BioImaging (invited conference), Paris, France, January 2015
  • T. Pécot, J. Boulanger, P. Bouthemy, S. Bardin, J. Salamero, C. Kervrann. A quantitative approach for space-time membrane trafficking orientation, Quantitative BioImaging, Paris, France, January 2015
  • A. Basset, J. Boulanger, P. Bouthemy, C. Kervrann, J. Salamero. Spot detection in light microscopy images with automatic scale selection and self-adaptive thresholding. BioImage Informatics, Leuven, October 2014
  • P. Roudot, L. Ding, K. Jaqaman, C. Burckhardt, C. Kervrann, G. Danuser. Tracking heterogeneous motions in dense condition. Symposium Seing is Believing - Imaging the Processes of Life , Heidelberg, Germany, October 2013
  • D. Fortun, C. Chen, P. Paul-Gilloteaux, F. Waharte, J. Salamero, C. Kervrann. Correlation and variational approaches for motion and diffusion estimation in fluorescence imaging. European Light Microscopy initiative (ELMI'13), Arcachon, France, May 2013
  • L. Guyon, C. Mignon, F. Senger, L. Blanchoin, J. Xie, C. Kervrann, D. Bourgeois. Lateral drift correction without fiduciary markers in PALM experiments. Swiss Single Molecule Localization Microscopy, Lausanne, Switzerland, August 2012
  • C. Kervrann, D. Fortun, P. Bouthemy. Aggregation methods for optical flow computation. SIAM Conference on Imaging Science 2012, Philadelphia, USA, May 2012
  • C. Kervrann. Patch-based methods and algorithms for breaking the signal-to-noise ratio in fluorescence microscopy and cryo-electron microscopy. BioImage Informatics, Dresde, Allemagne, September 2012
  • I. Arnal, F. Coquelle, S. Blestel, B. Vitre, C. Heichette, C. Kervrann, D. Chrétien. Structural basis of the interaction between microtubules and +TIPs. EMBO Conference Series Microtubules - Structure, Regulation and Functions, Heidelberg, Germany, June 2010
  • S. Blestel, C.and Heichette, C. Fish, P. Dupuys-Williams, D. Chrétien, C. Kervrann. Electron cryo-tomography of microtubule assemblies: automatic segmentation of tomograms with CryoSeg. In EMBO Conference Series Microtubules - Structure, Regulation and Functions , Heidelberg, Germany, June 2010
  • F. Coquelle, S. Blestel, K. Kinoshita, B. Vitre, C. Heichette, C. Kervrann, I. Arnal, D. Chrétien. Effects of XMAP215 on Microtubule Dynamics and Structure and its Visualization by Electron Cryo-Tomography. In EMBO Conference Series Microtubules - Structure, Regulation and Functions, Heidelberg, Germany, June 2010
  • A. Guesdon, S. Blestel, C. Heichette, C. Kervrann, D. Chrétien. Three dimensional reconstruction of 14 protofilaments GMPCPP-microtubules using TubuleJ. In EMBO Conference Series Microtubules - Structure, Regulation and Functions, Heidelberg, Germany, June 2010
  • C. Kervrann. Non-local means filter and novel bayesian approximations for non-local image regularization. In SIAM Conf. on Imaging Science, Chicago, Illinois, April 2010
  • A. Chessel, B. Cinquin, F. Waharte, Ch. Kervrann, J. Salamero. A detection based framework for systematic analysis of dual color TIRF microscopy. In Focus on Microscopy (FOM'10), Shanghai, China, March 2010

National Conferences

  • A. Basset, P. Bouthemy, F. Waharte, J. Salamero, C. Kervrann. Modélisation et estimation de la diffusion de protéines à l'exocytose dans des séquences d'images de microscopie TIRF. 20ème Congrès de Reconnaissance des Formes et d'Intelligence Artificielle (RFIA'16), Clermont-Ferrand, juin 2016
  • V. Briane, M. Vimond, C. Kervrann. Test statistique pour détecter les diffusions non browniennes. Journées de Statistique, Montpellier, 2016
  • A. Basset, J. Boulanger, P. Bouthemy, C. Kervrann, J. Salamero. Sélection d’échelle automatique précise et seuillage localement adapté pour la segmentation de vésicules en microscopie TIRF. 19ème Congrès de Reconnaissance des Formes et d'Intelligence Artificielle (RFIA'14), Rouen, juillet 2014
  • D. Fortun, P. Bouthemy, C. Kervrann. Agrégation d’estimations semi-locales pour le flot optique. 24ème colloque GRETSI Traitement du Signal et des Images, Brest, septembre 2013
  • J. Boulanger, T. Pécot, C. Kervrann, P. Bouthemy, J. Salamero. Estimation de flux d’objets fluorescents dans les séquences de vidéo-microscopie. 24ème colloque GRETSI Traitement du Signal et des Images, Brest, septembre 2013
  • A. Basset, P. Bouthemy, C. Kervrann. Classification instantanée de mouvements de foules dans des vidéos. 24ème colloque GRETSI Traitement du Signal et des Images, Brest, septembre 2013